I’ve added new teaching material in the teaching section. It’s a short tutorial on extracting and analyzing Ca2+ fluorescence signals ꜛ with Fiji ꜛ and a default spreadsheet program, designed for a max. 1 h session. The tutorial is highly and thankfully inspired by this blog post ꜛ of Akira Muto.
19 minute read
In this post we explore the Integrate-and-Fire model, a simplified representation of a neuron. We also run some simulations in Python to understand the mode...
3 minute read
High-throughput and multi-modal behavior experiments, coupled with machine learning analysis, unlock valuable insights into complex systems by capturing dive...
3 minute read
I’ve added new teaching material on using the free and open-source software (FOSS) Napari for bioimage analysis. Feel free to use and share it.
15 minute read
In this post, we explore the performance of PCA, Kernel PCA, denoising autoencoder, and CNN for image denoising.
1 minute read
A new study on Tauopathy in which our lab was involved has just been published.
8 minute read
Mutual information is an essential measure in information theory that quantifies the statistical dependence between two random variables. Given its broad app...
6 minute read
A fundamental concept that plays a pivotal role in quantifying the uncertainty or randomness of a set of data is the information entropy. Information entropy...
36 minute read
Which method works best for which registration problem? In this tutorial we compare different methods for the registration of bio-images using Python.